STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE38655.1Aminocarboxymuconate-semialdehyde decarboxylase. (339 aa)    
Predicted Functional Partners:
SFE38630.1
Catechol 2,3-dioxygenase.
    
 0.924
SFE38810.1
Catechol 2,3-dioxygenase.
    
 0.853
SFD39508.1
Catechol 2,3-dioxygenase.
    
 0.798
SFE14870.1
Glyoxalase family protein.
    
 0.798
SFE23982.1
Catechol 2,3-dioxygenase.
    
 0.798
SFE38446.1
Aminomuconate-semialdehyde/2-hydroxymuconate-6- semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
  0.739
SFE38692.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.735
SFE38721.1
3alpha(or 20beta)-hydroxysteroid dehydrogenase.
  
 
  0.527
SFE38752.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.483
SFE38779.1
TRAP transporter, DctM subunit.
       0.483
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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