STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE47967.1Germination protein, Ger(x)C family. (380 aa)    
Predicted Functional Partners:
SFE48001.1
Spore germination protein (amino acid permease).
 
  
 0.951
SFE48028.1
Spore germination protein KA.
 
  
 0.934
SFD72927.1
Small acid-soluble spore protein F (minor alpha/beta-type SASP).
  
     0.573
SFE49470.1
N-acetylmuramoyl-L-alanine amidase.
  
    0.488
SFD39957.1
Spore germination protein KA.
 
  
 0.473
SFD50736.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.462
SFD45800.1
Spore germination protein (amino acid permease).
 
  
 0.441
SFD52104.1
Arginine utilization protein RocB.
  
     0.426
SFE48057.1
2-keto-4-pentenoate hydratase.
       0.416
Your Current Organism:
Lentibacillus persicus
NCBI taxonomy Id: 640948
Other names: CCM 7683, CECT 7524, DSM 22530, L. persicus, LMG 25304, LMG:25304, Lentibacillus persicus Sanchez-Porro et al. 2010, Lentibacillus sp. Amb31, strain Amb31
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