STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO10590.1Helix-turn-helix domain-containing protein. (282 aa)    
Predicted Functional Partners:
SDO10614.1
Protein of unknown function.
 
   
 0.861
SDO03558.1
S-adenosyl methyltransferase.
  
     0.761
SDP46640.1
S-adenosyl methyltransferase.
  
     0.759
SDP61569.1
S-adenosyl methyltransferase.
  
     0.759
SDP83688.1
S-adenosyl methyltransferase.
  
     0.758
SDN88333.1
S-adenosyl methyltransferase.
  
     0.757
SDP41256.1
Protein of unknown function.
  
  
  0.754
SDN93223.1
S-adenosyl methyltransferase.
  
     0.753
SDO39414.1
S-adenosyl methyltransferase.
  
     0.753
SDP72204.1
S-adenosyl methyltransferase.
  
     0.730
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.