STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO11221.1DNA-binding transcriptional regulator of glucitol operon. (127 aa)    
Predicted Functional Partners:
SDO11244.1
Integral membrane protein.
       0.842
SDP22246.1
Protein of unknown function.
 
     0.742
SDP54242.1
Protein of unknown function.
  
     0.740
SDN99988.1
Protein of unknown function.
  
     0.731
SDN83487.1
Hypothetical protein.
  
     0.721
SDN98723.1
Hypothetical protein.
  
     0.716
SDN99100.1
PH domain-containing protein.
  
     0.693
SDP48306.1
DivIVA domain-containing protein.
  
    0.681
SDP55204.1
Protein of unknown function.
  
     0.678
SDP98712.1
Protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.677
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.