STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO14896.1D-serine deaminase, pyridoxal phosphate-dependent. (430 aa)    
Predicted Functional Partners:
SDO14872.1
N-acyl-D-amino-acid deacylase.
 
   
 0.954
SDN92839.1
Pyruvate dehydrogenase (quinone); Belongs to the TPP enzyme family.
  
 
  0.871
SDO14843.1
gluconate:H+ symporter, GntP family.
 
    0.825
SDO14938.1
2-dehydro-3-deoxygluconokinase.
 
     0.730
SDN89926.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
 
  0.698
SDO14966.1
DNA-binding transcriptional regulator, IclR family.
 
     0.616
SDO14988.1
Reactive intermediate/imine deaminase.
       0.577
SDO14813.1
Alpha-galactosidase.
       0.518
SDO38851.1
Capreomycidine synthase.
    
  0.470
SDP83983.1
Aspartate/methionine/tyrosine aminotransferase.
    
  0.470
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.