STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN82157.1ABC-2 type transport system ATP-binding protein. (323 aa)    
Predicted Functional Partners:
SDN82209.1
ABC-2 type transport system permease protein.
 
 
 0.990
SDN82185.1
ABC-2 type transport system permease protein.
 
 
 0.989
SDN82124.1
Hypothetical protein.
       0.642
SDN82243.1
Serine/threonine protein kinase.
       0.532
SDO33209.1
Putative aldouronate transport system permease protein.
  
  
  0.511
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
   0.507
SDO96848.1
Multiple sugar transport system substrate-binding protein.
  
  
  0.459
SDN82092.1
Protein of unknown function.
       0.452
SDN82272.1
Hypothetical protein.
       0.451
SDO10043.1
Glutamate synthase (NADPH/NADH) large chain.
       0.426
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.