STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN87188.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
SDP24763.1
Protein of unknown function.
  
  
  0.737
SDP89519.1
Helix-turn-helix domain-containing protein.
  
     0.698
SDP96947.1
Signal transduction histidine kinase.
  
     0.697
SDP96225.1
Protein of unknown function.
  
  
  0.691
SDP41256.1
Protein of unknown function.
  
  
  0.690
SDN88333.1
S-adenosyl methyltransferase.
  
     0.687
SDP96937.1
Protein of unknown function.
  
  
  0.684
SDP72204.1
S-adenosyl methyltransferase.
  
     0.682
SDP61336.1
DNA-binding transcriptional activator of the SARP family.
  
    0.675
SDO03558.1
S-adenosyl methyltransferase.
  
     0.674
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.