STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN90021.13-dehydroquinate synthase. (216 aa)    
Predicted Functional Partners:
SDO30843.1
Hypothetical protein.
  
     0.748
SDO39432.1
Hypothetical protein.
  
     0.713
SDP97303.1
AAA domain-containing protein.
  
     0.698
SDN75355.1
Hypothetical protein.
  
     0.685
SDO44606.1
Hypothetical protein.
  
     0.675
SDP35543.1
AAA domain-containing protein.
  
     0.652
SDN73934.1
Hypothetical protein.
  
     0.639
SDP12330.1
Caspase domain-containing protein.
  
     0.629
SDO12963.1
Hypothetical protein.
 
     0.600
SDO15789.1
TIR domain-containing protein.
  
     0.591
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.