Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO30691.1 | SDO30718.1 | SAMN05421507_102101 | SAMN05421507_102102 | NADPH:quinone reductase. | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | 0.662 |
SDO30691.1 | SDO30745.1 | SAMN05421507_102101 | SAMN05421507_102103 | NADPH:quinone reductase. | FMN reductase. | 0.478 |
SDO30691.1 | SDO61845.1 | SAMN05421507_102101 | SAMN05421507_103146 | NADPH:quinone reductase. | Acyl transferase domain-containing protein. | 0.801 |
SDO30718.1 | SDO30691.1 | SAMN05421507_102102 | SAMN05421507_102101 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | NADPH:quinone reductase. | 0.662 |
SDO30718.1 | SDO30745.1 | SAMN05421507_102102 | SAMN05421507_102103 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | FMN reductase. | 0.628 |
SDO30718.1 | SDO61845.1 | SAMN05421507_102102 | SAMN05421507_103146 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | Acyl transferase domain-containing protein. | 0.551 |
SDO30718.1 | SDP26966.1 | SAMN05421507_102102 | SAMN05421507_106249 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | ATP-dependent helicase HrpB. | 0.508 |
SDO30718.1 | SDP67562.1 | SAMN05421507_102102 | SAMN05421507_112130 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | ATP-dependent helicase HrpA. | 0.508 |
SDO30718.1 | SDP97214.1 | SAMN05421507_102102 | SAMN05421507_13020 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | Ribonuclease D. | 0.688 |
SDO30718.1 | gmk | SAMN05421507_102102 | SAMN05421507_105253 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.706 |
SDO30718.1 | rpsD | SAMN05421507_102102 | SAMN05421507_101271 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.808 |
SDO30718.1 | rpsK | SAMN05421507_102102 | SAMN05421507_101270 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.741 |
SDO30718.1 | rpsQ | SAMN05421507_102102 | SAMN05421507_101252 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.518 |
SDO30745.1 | SDO30691.1 | SAMN05421507_102103 | SAMN05421507_102101 | FMN reductase. | NADPH:quinone reductase. | 0.478 |
SDO30745.1 | SDO30718.1 | SAMN05421507_102103 | SAMN05421507_102102 | FMN reductase. | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | 0.628 |
SDO61845.1 | SDO30691.1 | SAMN05421507_103146 | SAMN05421507_102101 | Acyl transferase domain-containing protein. | NADPH:quinone reductase. | 0.801 |
SDO61845.1 | SDO30718.1 | SAMN05421507_103146 | SAMN05421507_102102 | Acyl transferase domain-containing protein. | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | 0.551 |
SDO61845.1 | gmk | SAMN05421507_103146 | SAMN05421507_105253 | Acyl transferase domain-containing protein. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.609 |
SDO61845.1 | rpsD | SAMN05421507_103146 | SAMN05421507_101271 | Acyl transferase domain-containing protein. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.596 |
SDO61845.1 | rpsK | SAMN05421507_103146 | SAMN05421507_101270 | Acyl transferase domain-containing protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.480 |
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