STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO28125.1Anti-sigma regulatory factor (Ser/Thr protein kinase). (132 aa)    
Predicted Functional Partners:
SDO37612.1
Anti-anti-sigma factor.
 
 0.909
SDO28151.1
Hypothetical protein.
 
     0.852
SDN88588.1
GAF domain-containing protein.
  
 
 0.810
SDO65478.1
PAS domain S-box-containing protein.
  
 0.708
SDO68483.1
Histidine kinase-like ATPase domain-containing protein.
  
     0.688
SDO67920.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
   0.679
SDP03258.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.665
SDP31817.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
   0.646
SDP97595.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
  
 0.638
SDP96051.1
Hypothetical protein.
  
   0.629
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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