STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO36815.1Predicted arabinose efflux permease, MFS family. (402 aa)    
Predicted Functional Partners:
SDO36785.1
Taurine catabolism dioxygenase TauD, TfdA family.
       0.786
SDO36969.1
Cysteine synthase A.
 
    0.665
SDO36849.1
Iron complex transport system substrate-binding protein.
 
     0.659
SDO36937.1
Putative heavy-metal chelation.
 
     0.641
SDO36910.1
Iron complex transport system ATP-binding protein.
       0.554
SDO36886.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.550
SDP88405.1
Hypothetical protein.
  
  
  0.463
SDP96895.1
Patatin-related protein.
  
     0.456
SDP94104.1
Hypothetical protein.
  
     0.443
SDP89519.1
Helix-turn-helix domain-containing protein.
  
     0.420
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.