STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO39499.1Putative transmembrane protein (PGPGW). (150 aa)    
Predicted Functional Partners:
SDP92894.1
Sulfoxide reductase heme-binding subunit YedZ.
  
     0.712
SDP93087.1
Hypothetical protein.
  
     0.558
SDO39465.1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.548
SDP93448.1
Hypothetical protein.
  
     0.496
SDP98378.1
Helix-turn-helix domain-containing protein.
 
 
   0.456
SDP93499.1
Transcriptional regulatory protein, C terminal.
  
     0.446
SDP90083.1
CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein.
  
     0.438
SDP46682.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.435
SDO39432.1
Hypothetical protein.
       0.420
SDO93381.1
Anion-transporting ATPase, ArsA/GET3 family.
   
   0.415
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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