STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO45638.1Taurine dioxygenase, alpha-ketoglutarate-dependent. (346 aa)    
Predicted Functional Partners:
SDO45670.1
Amino acid adenylation domain-containing protein.
    0.927
SDP40646.1
Amino acid adenylation domain-containing protein.
 
 0.918
SDO45575.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.887
SDO45688.1
Surfactin synthase thioesterase subunit.
 
  
 0.885
SDO45604.1
Amino acid adenylation domain-containing protein.
  
 0.880
SDP99076.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
 0.870
SDP40623.1
Amino acid adenylation domain-containing protein.
  
 0.806
SDO45513.1
Phosphopantetheine attachment site.
 
  
 0.740
SDP95601.1
AMP-binding enzyme C-terminal domain-containing protein.
 
 0.738
SDO45481.1
Surfactin synthase thioesterase subunit.
 
  
 0.707
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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