Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO10043.1 | SDO67997.1 | SAMN05421507_1011343 | SAMN05421507_103332 | Glutamate synthase (NADPH/NADH) large chain. | Amidase. | 0.834 |
SDO10043.1 | SDO68035.1 | SAMN05421507_1011343 | SAMN05421507_103333 | Glutamate synthase (NADPH/NADH) large chain. | Asparagine synthase (glutamine-hydrolysing). | 0.863 |
SDO10043.1 | SDP04437.1 | SAMN05421507_1011343 | SAMN05421507_10560 | Glutamate synthase (NADPH/NADH) large chain. | glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.979 |
SDO10043.1 | carB | SAMN05421507_1011343 | SAMN05421507_105250 | Glutamate synthase (NADPH/NADH) large chain. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.991 |
SDO10043.1 | gatA | SAMN05421507_1011343 | SAMN05421507_101947 | Glutamate synthase (NADPH/NADH) large chain. | aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.935 |
SDO10043.1 | gatB | SAMN05421507_1011343 | SAMN05421507_101949 | Glutamate synthase (NADPH/NADH) large chain. | aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.943 |
SDO10043.1 | gatC | SAMN05421507_1011343 | SAMN05421507_101946 | Glutamate synthase (NADPH/NADH) large chain. | aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.950 |
SDO10043.1 | guaA | SAMN05421507_1011343 | SAMN05421507_101328 | Glutamate synthase (NADPH/NADH) large chain. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.989 |
SDO45854.1 | SDO67997.1 | SAMN05421507_102593 | SAMN05421507_103332 | asparaginyl-tRNA synthetase. | Amidase. | 0.891 |
SDO45854.1 | SDP04437.1 | SAMN05421507_102593 | SAMN05421507_10560 | asparaginyl-tRNA synthetase. | glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.941 |
SDO45854.1 | aspS | SAMN05421507_102593 | SAMN05421507_113172 | asparaginyl-tRNA synthetase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.894 |
SDO45854.1 | gatA | SAMN05421507_102593 | SAMN05421507_101947 | asparaginyl-tRNA synthetase. | aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.960 |
SDO45854.1 | gatB | SAMN05421507_102593 | SAMN05421507_101949 | asparaginyl-tRNA synthetase. | aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.995 |
SDO45854.1 | gatC | SAMN05421507_102593 | SAMN05421507_101946 | asparaginyl-tRNA synthetase. | aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.978 |
SDO45854.1 | guaA | SAMN05421507_102593 | SAMN05421507_101328 | asparaginyl-tRNA synthetase. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.661 |
SDO67997.1 | SDO10043.1 | SAMN05421507_103332 | SAMN05421507_1011343 | Amidase. | Glutamate synthase (NADPH/NADH) large chain. | 0.834 |
SDO67997.1 | SDO45854.1 | SAMN05421507_103332 | SAMN05421507_102593 | Amidase. | asparaginyl-tRNA synthetase. | 0.891 |
SDO67997.1 | SDO68035.1 | SAMN05421507_103332 | SAMN05421507_103333 | Amidase. | Asparagine synthase (glutamine-hydrolysing). | 0.765 |
SDO67997.1 | SDP04437.1 | SAMN05421507_103332 | SAMN05421507_10560 | Amidase. | glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.935 |
SDO67997.1 | aspS | SAMN05421507_103332 | SAMN05421507_113172 | Amidase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.809 |
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