STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO91891.1Pilus assembly protein CpaF. (370 aa)    
Predicted Functional Partners:
SDO91853.1
Tight adherence protein B.
 
  
 0.977
SDO91823.1
Type II secretion system (T2SS), protein F.
  
  
 0.969
SDO91749.1
Hypothetical protein.
  
  
 0.897
SDO91787.1
Protein of unknown function.
     
 0.875
SDP97827.1
AAA-like domain-containing protein.
    
 0.707
SDO81451.1
Chaperone for flagella basal body P-ring formation.
  
  
 0.689
SDO91960.1
Hypothetical protein.
       0.535
SDO91988.1
Helicase/secretion neighborhood CpaE-like protein.
       0.493
SDP94610.1
Signal transduction histidine kinase.
  
  
 0.484
SDP53484.1
Competence protein ComEC.
  
   
 0.430
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.