STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO93077.1Predicted dehydrogenase. (296 aa)    
Predicted Functional Partners:
SDP83345.1
Inosose dehydratase.
 
 
  0.795
SDO93043.1
Tetratricopeptide repeat-containing protein.
    
  0.779
SDO93106.1
Hypothetical protein.
       0.765
SDP83259.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Belongs to the TPP enzyme family.
 
  
 0.687
SDP83272.1
5-deoxy-glucuronate isomerase.
 
  
 0.681
SDP95881.1
Aminotransferase EvaB; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.665
SDO58914.1
Aminotransferase EvaB; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.664
SDP06734.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.660
SDP75981.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.646
SDO93141.1
Hypothetical protein.
  
    0.624
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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