STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO96209.1AraC-type DNA-binding protein. (143 aa)    
Predicted Functional Partners:
SDO96237.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.946
SDP35956.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.797
SDO03277.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.793
SDO10043.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.705
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.614
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.601
SDP55733.1
AraC-type DNA-binding protein.
  
     0.598
SDP94610.1
Signal transduction histidine kinase.
    
 0.585
SDP43313.1
AraC-type DNA-binding protein.
  
     0.582
SDP56657.1
AraC-type DNA-binding protein.
  
     0.555
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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