STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP14441.1Tetratricopeptide repeat-containing protein. (446 aa)    
Predicted Functional Partners:
SDP14467.1
Protein of unknown function.
 
     0.821
SDP68844.1
Protein of unknown function.
  
     0.734
SDP68765.1
WD domain-containing protein, G-beta repeat-containing protein.
  
     0.726
SDP68823.1
WD domain-containing protein, G-beta repeat-containing protein.
 
     0.725
SDP36599.1
Von Willebrand factor type A domain-containing protein.
 
     0.713
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.709
SDP68804.1
WD40 repeat.
 
     0.704
SDP94610.1
Signal transduction histidine kinase.
    
 0.701
SDO09294.1
WD40 repeat.
  
     0.684
SDP68783.1
Hypothetical protein.
  
     0.681
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.