STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP25800.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (214 aa)    
Predicted Functional Partners:
SDP25771.1
Signal transduction histidine kinase.
 
  0.963
SDP94610.1
Signal transduction histidine kinase.
  
 0.954
SDN88588.1
GAF domain-containing protein.
  
 0.931
SDP97595.1
DNA-binding transcriptional regulator, LacI/PurR family.
   
 0.871
SDP27101.1
Signal transduction histidine kinase.
 
  0.837
SDP96546.1
Signal transduction histidine kinase.
 
  0.835
SDP43371.1
Histidine kinase.
 
  0.825
SDP41543.1
Histidine kinase.
 
  0.825
SDP13066.1
Signal transduction histidine kinase.
  
  0.785
SDP25831.1
Phosphotransferase enzyme family protein.
       0.773
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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