STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP22750.1Uncharacterized conserved protein YndB, AHSA1/START domain. (172 aa)    
Predicted Functional Partners:
SDP22728.1
DNA-binding transcriptional regulator, ArsR family.
    0.941
SDP22770.1
Hypothetical protein.
       0.623
SDP22705.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
       0.541
SDP67109.1
Regulatory protein, tetR family.
  
     0.525
SDP94743.1
Regulatory protein, tetR family.
  
     0.479
SDP22650.1
Cysteine synthase B.
       0.478
SDP22675.1
Molybdopterin synthase subunit MoaD.
       0.478
SDP67406.1
Regulatory protein, tetR family.
  
     0.444
SDO05999.1
HicB family protein.
  
     0.414
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.