STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP42581.1Fumarylacetoacetate (FAA) hydrolase family protein. (305 aa)    
Predicted Functional Partners:
SDP76457.1
Homogentisate 1,2-dioxygenase.
 
 
 0.794
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 0.786
SDP87704.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
 
 0.759
SDO14676.1
Maleylpyruvate isomerase.
    
  0.712
SDP85657.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.708
SDN83178.1
Succinate dehydrogenase / fumarate reductase membrane anchor subunit.
   
 
  0.704
SDN83208.1
Succinate dehydrogenase / fumarate reductase cytochrome b subunit.
   
 
  0.702
SDN83121.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
  0.658
SDP86477.1
Succinate dehydrogenase / fumarate reductase iron-sulfur subunit.
  
 
  0.658
SDP11977.1
FAD/FMN-containing dehydrogenase.
  
 
  0.656
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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