SDP39900.1 protein (Lentzea jiangxiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDP39900.1

Polyketide cyclase / dehydrase and lipid transport. (151 aa)

Predicted Functional Partners:

SDP39840.1

0.930

SDP39858.1

0.909

SDP39881.1

0.829

cysD

0.595

cysC

0.595

SDP39779.1

0.594

SDP39757.1

0.560

SDP39921.1

0.526

SDN75355.1

0.504

SDO39432.1

0.496

Your Current Organism:

Lentzea jiangxiensis

NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDN75355.1	SDO39432.1	SAMN05421507_101171	SAMN05421507_102391	Hypothetical protein.	Hypothetical protein.	0.784
SDN75355.1	SDP39900.1	SAMN05421507_101171	SAMN05421507_10817	Hypothetical protein.	Polyketide cyclase / dehydrase and lipid transport.	0.504
SDO39432.1	SDN75355.1	SAMN05421507_102391	SAMN05421507_101171	Hypothetical protein.	Hypothetical protein.	0.784
SDO39432.1	SDP39900.1	SAMN05421507_102391	SAMN05421507_10817	Hypothetical protein.	Polyketide cyclase / dehydrase and lipid transport.	0.496
SDP39757.1	SDP39779.1	SAMN05421507_10810	SAMN05421507_10811	DNA-binding transcriptional regulator, AcrR family.	3'(2'), 5'-bisphosphate nucleotidase.	0.564
SDP39757.1	SDP39840.1	SAMN05421507_10810	SAMN05421507_10814	DNA-binding transcriptional regulator, AcrR family.	Protein of unknown function.	0.438
SDP39757.1	SDP39858.1	SAMN05421507_10810	SAMN05421507_10815	DNA-binding transcriptional regulator, AcrR family.	Sulfotransferase family protein.	0.438
SDP39757.1	SDP39881.1	SAMN05421507_10810	SAMN05421507_10816	DNA-binding transcriptional regulator, AcrR family.	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.	0.438
SDP39757.1	SDP39900.1	SAMN05421507_10810	SAMN05421507_10817	DNA-binding transcriptional regulator, AcrR family.	Polyketide cyclase / dehydrase and lipid transport.	0.560
SDP39757.1	cysC	SAMN05421507_10810	SAMN05421507_10813	DNA-binding transcriptional regulator, AcrR family.	Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.	0.616
SDP39757.1	cysD	SAMN05421507_10810	SAMN05421507_10812	DNA-binding transcriptional regulator, AcrR family.	Sulfate adenylyltransferase subunit 2.	0.564
SDP39779.1	SDP39757.1	SAMN05421507_10811	SAMN05421507_10810	3'(2'), 5'-bisphosphate nucleotidase.	DNA-binding transcriptional regulator, AcrR family.	0.564
SDP39779.1	SDP39840.1	SAMN05421507_10811	SAMN05421507_10814	3'(2'), 5'-bisphosphate nucleotidase.	Protein of unknown function.	0.661
SDP39779.1	SDP39858.1	SAMN05421507_10811	SAMN05421507_10815	3'(2'), 5'-bisphosphate nucleotidase.	Sulfotransferase family protein.	0.663
SDP39779.1	SDP39881.1	SAMN05421507_10811	SAMN05421507_10816	3'(2'), 5'-bisphosphate nucleotidase.	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.	0.590
SDP39779.1	SDP39900.1	SAMN05421507_10811	SAMN05421507_10817	3'(2'), 5'-bisphosphate nucleotidase.	Polyketide cyclase / dehydrase and lipid transport.	0.594
SDP39779.1	SDP39921.1	SAMN05421507_10811	SAMN05421507_10818	3'(2'), 5'-bisphosphate nucleotidase.	Hypothetical protein.	0.408
SDP39779.1	cysC	SAMN05421507_10811	SAMN05421507_10813	3'(2'), 5'-bisphosphate nucleotidase.	Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.	0.991
SDP39779.1	cysD	SAMN05421507_10811	SAMN05421507_10812	3'(2'), 5'-bisphosphate nucleotidase.	Sulfate adenylyltransferase subunit 2.	0.959
SDP39840.1	SDP39757.1	SAMN05421507_10814	SAMN05421507_10810	Protein of unknown function.	DNA-binding transcriptional regulator, AcrR family.	0.438