Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO10043.1 | SDO41055.1 | SAMN05421507_1011343 | SAMN05421507_102442 | Glutamate synthase (NADPH/NADH) large chain. | AraC-type DNA-binding protein. | 0.705 |
SDO10043.1 | SDO65306.1 | SAMN05421507_1011343 | SAMN05421507_103250 | Glutamate synthase (NADPH/NADH) large chain. | AraC-type DNA-binding protein. | 0.705 |
SDO10043.1 | SDO96209.1 | SAMN05421507_1011343 | SAMN05421507_104544 | Glutamate synthase (NADPH/NADH) large chain. | AraC-type DNA-binding protein. | 0.705 |
SDO10043.1 | SDP35938.1 | SAMN05421507_1011343 | SAMN05421507_107200 | Glutamate synthase (NADPH/NADH) large chain. | AraC-type DNA-binding protein. | 0.705 |
SDO10043.1 | SDP43313.1 | SAMN05421507_1011343 | SAMN05421507_108175 | Glutamate synthase (NADPH/NADH) large chain. | AraC-type DNA-binding protein. | 0.705 |
SDO10043.1 | SDP94610.1 | SAMN05421507_1011343 | SAMN05421507_12410 | Glutamate synthase (NADPH/NADH) large chain. | Signal transduction histidine kinase. | 0.874 |
SDO10043.1 | carA | SAMN05421507_1011343 | SAMN05421507_105249 | Glutamate synthase (NADPH/NADH) large chain. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.949 |
SDO10043.1 | ribBA | SAMN05421507_1011343 | SAMN05421507_105271 | Glutamate synthase (NADPH/NADH) large chain. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.435 |
SDO10043.1 | rpoA | SAMN05421507_1011343 | SAMN05421507_101272 | Glutamate synthase (NADPH/NADH) large chain. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.524 |
SDO41055.1 | SDO10043.1 | SAMN05421507_102442 | SAMN05421507_1011343 | AraC-type DNA-binding protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.705 |
SDO41055.1 | SDP43313.1 | SAMN05421507_102442 | SAMN05421507_108175 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.520 |
SDO41055.1 | SDP80061.1 | SAMN05421507_102442 | SAMN05421507_11528 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.785 |
SDO41055.1 | SDP94610.1 | SAMN05421507_102442 | SAMN05421507_12410 | AraC-type DNA-binding protein. | Signal transduction histidine kinase. | 0.646 |
SDO41055.1 | carA | SAMN05421507_102442 | SAMN05421507_105249 | AraC-type DNA-binding protein. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.432 |
SDO41055.1 | ribBA | SAMN05421507_102442 | SAMN05421507_105271 | AraC-type DNA-binding protein. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.614 |
SDO41055.1 | rpoA | SAMN05421507_102442 | SAMN05421507_101272 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.601 |
SDO65306.1 | SDO10043.1 | SAMN05421507_103250 | SAMN05421507_1011343 | AraC-type DNA-binding protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.705 |
SDO65306.1 | SDP43313.1 | SAMN05421507_103250 | SAMN05421507_108175 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.546 |
SDO65306.1 | SDP80061.1 | SAMN05421507_103250 | SAMN05421507_11528 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.484 |
SDO65306.1 | SDP94610.1 | SAMN05421507_103250 | SAMN05421507_12410 | AraC-type DNA-binding protein. | Signal transduction histidine kinase. | 0.585 |
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