STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP49216.1ABC-2 type transport system permease protein. (268 aa)    
Predicted Functional Partners:
SDP49192.1
ABC-2 type transport system ATP-binding protein.
 
  0.975
SDP49169.1
Outer membrane lipoprotein-sorting protein.
 
     0.967
SDO13556.1
ABC-2 type transport system ATP-binding protein.
 
  0.806
SDP94974.1
ABC-2 type transport system ATP-binding protein.
  
  0.701
SDN89713.1
ABC-2 type transport system ATP-binding protein.
 
  0.700
SDN89691.1
ABC-2 type transport system permease protein.
 
  0.699
SDP49112.1
Signal transduction histidine kinase.
 
     0.668
SDP49142.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.668
SDN96442.1
ABC-2 type transport system ATP-binding protein.
  
  0.647
SDO43326.1
Oleandomycin transport system ATP-binding protein.
  
  0.647
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.