STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP56446.1PPE family protein. (446 aa)    
Predicted Functional Partners:
SDP56467.1
EspG family protein.
 
     0.946
SDO71464.1
EspG family protein.
 
  
 0.845
SDO71554.1
EspG family protein.
 
  
 0.845
SDN80882.1
Hypothetical protein.
  
 
   0.826
SDP83619.1
EspG family protein.
 
  
 0.796
SDN84538.1
EspG family protein.
 
  
 0.788
SDP56425.1
Protein of unknown function.
       0.787
SDN78651.1
Type VII secretion protein EccE.
  
 
   0.777
SDN79234.1
Hypothetical protein.
  
 
   0.777
SDN85259.1
Protein of unknown function.
  
 
   0.775
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.