Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO10043.1 | SDP57246.1 | SAMN05421507_1011343 | SAMN05421507_110214 | Glutamate synthase (NADPH/NADH) large chain. | Hippurate hydrolase. | 0.824 |
SDO10043.1 | dapF | SAMN05421507_1011343 | SAMN05421507_117102 | Glutamate synthase (NADPH/NADH) large chain. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.982 |
SDP25414.1 | SDP57246.1 | SAMN05421507_106194 | SAMN05421507_110214 | Imidazolonepropionase. | Hippurate hydrolase. | 0.428 |
SDP57230.1 | SDP57246.1 | SAMN05421507_110213 | SAMN05421507_110214 | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | Hippurate hydrolase. | 0.503 |
SDP57230.1 | SDP57267.1 | SAMN05421507_110213 | SAMN05421507_110215 | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | Uncharacterized membrane protein YhhN. | 0.420 |
SDP57246.1 | SDO10043.1 | SAMN05421507_110214 | SAMN05421507_1011343 | Hippurate hydrolase. | Glutamate synthase (NADPH/NADH) large chain. | 0.824 |
SDP57246.1 | SDP25414.1 | SAMN05421507_110214 | SAMN05421507_106194 | Hippurate hydrolase. | Imidazolonepropionase. | 0.428 |
SDP57246.1 | SDP57230.1 | SAMN05421507_110214 | SAMN05421507_110213 | Hippurate hydrolase. | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | 0.503 |
SDP57246.1 | SDP57267.1 | SAMN05421507_110214 | SAMN05421507_110215 | Hippurate hydrolase. | Uncharacterized membrane protein YhhN. | 0.631 |
SDP57246.1 | dapD | SAMN05421507_110214 | SAMN05421507_109108 | Hippurate hydrolase. | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | 0.465 |
SDP57246.1 | dapF | SAMN05421507_110214 | SAMN05421507_117102 | Hippurate hydrolase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.651 |
SDP57267.1 | SDP57230.1 | SAMN05421507_110215 | SAMN05421507_110213 | Uncharacterized membrane protein YhhN. | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | 0.420 |
SDP57267.1 | SDP57246.1 | SAMN05421507_110215 | SAMN05421507_110214 | Uncharacterized membrane protein YhhN. | Hippurate hydrolase. | 0.631 |
dapD | SDP57246.1 | SAMN05421507_109108 | SAMN05421507_110214 | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | Hippurate hydrolase. | 0.465 |
dapD | dapF | SAMN05421507_109108 | SAMN05421507_117102 | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.775 |
dapF | SDO10043.1 | SAMN05421507_117102 | SAMN05421507_1011343 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Glutamate synthase (NADPH/NADH) large chain. | 0.982 |
dapF | SDP57246.1 | SAMN05421507_117102 | SAMN05421507_110214 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Hippurate hydrolase. | 0.651 |
dapF | dapD | SAMN05421507_117102 | SAMN05421507_109108 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. | 0.775 |