STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP60528.1Dioxygenase. (208 aa)    
Predicted Functional Partners:
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
 
 0.936
SDO31087.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
 
 
 0.788
SDO12039.1
Alcohol dehydrogenase, class IV.
 
  
 0.777
SDP92086.1
NAD(P)H-flavin reductase; Belongs to the globin family.
  
 
 0.737
SDO96094.1
Carboxymethylenebutenolidase.
   
 
  0.702
SDP91801.1
Carboxymethylenebutenolidase.
   
 
  0.702
SDP96396.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.701
SDO31006.1
Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.677
SDO31036.1
Protocatechuate 3,4-dioxygenase alpha subunit.
 
  
 0.676
SDP96731.1
2-polyprenyl-6-methoxyphenol hydroxylase.
 
  
 0.676
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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