Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN95393.1 | SDP53419.1 | SAMN05421507_101826 | SAMN05421507_11010 | Hypothetical protein. | DNA polymerase III, delta subunit. | 0.763 |
SDN95393.1 | SDP72469.1 | SAMN05421507_101826 | SAMN05421507_113107 | Hypothetical protein. | MerR HTH family regulatory protein. | 0.748 |
SDN95393.1 | SDP77812.1 | SAMN05421507_101826 | SAMN05421507_114149 | Hypothetical protein. | Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives). | 0.669 |
SDN95393.1 | SDP77856.1 | SAMN05421507_101826 | SAMN05421507_114152 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.722 |
SDN95393.1 | SDP85385.1 | SAMN05421507_101826 | SAMN05421507_11718 | Hypothetical protein. | Protein of unknown function. | 0.686 |
SDN95393.1 | SDP98653.1 | SAMN05421507_101826 | SAMN05421507_14222 | Hypothetical protein. | Protein of unknown function. | 0.425 |
SDN95393.1 | rbpA | SAMN05421507_101826 | SAMN05421507_11810 | Hypothetical protein. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.679 |
SDP53419.1 | SDN95393.1 | SAMN05421507_11010 | SAMN05421507_101826 | DNA polymerase III, delta subunit. | Hypothetical protein. | 0.763 |
SDP53419.1 | SDP72469.1 | SAMN05421507_11010 | SAMN05421507_113107 | DNA polymerase III, delta subunit. | MerR HTH family regulatory protein. | 0.790 |
SDP53419.1 | SDP77812.1 | SAMN05421507_11010 | SAMN05421507_114149 | DNA polymerase III, delta subunit. | Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives). | 0.847 |
SDP53419.1 | SDP77856.1 | SAMN05421507_11010 | SAMN05421507_114152 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.998 |
SDP53419.1 | SDP85385.1 | SAMN05421507_11010 | SAMN05421507_11718 | DNA polymerase III, delta subunit. | Protein of unknown function. | 0.753 |
SDP53419.1 | SDP98653.1 | SAMN05421507_11010 | SAMN05421507_14222 | DNA polymerase III, delta subunit. | Protein of unknown function. | 0.441 |
SDP53419.1 | rbpA | SAMN05421507_11010 | SAMN05421507_11810 | DNA polymerase III, delta subunit. | RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.762 |
SDP72469.1 | SDN95393.1 | SAMN05421507_113107 | SAMN05421507_101826 | MerR HTH family regulatory protein. | Hypothetical protein. | 0.748 |
SDP72469.1 | SDP53419.1 | SAMN05421507_113107 | SAMN05421507_11010 | MerR HTH family regulatory protein. | DNA polymerase III, delta subunit. | 0.790 |
SDP72469.1 | SDP77812.1 | SAMN05421507_113107 | SAMN05421507_114149 | MerR HTH family regulatory protein. | Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives). | 0.636 |
SDP72469.1 | SDP77856.1 | SAMN05421507_113107 | SAMN05421507_114152 | MerR HTH family regulatory protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.401 |
SDP72469.1 | SDP85385.1 | SAMN05421507_113107 | SAMN05421507_11718 | MerR HTH family regulatory protein. | Protein of unknown function. | 0.773 |
SDP72469.1 | SDP98653.1 | SAMN05421507_113107 | SAMN05421507_14222 | MerR HTH family regulatory protein. | Protein of unknown function. | 0.530 |
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