STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP76666.1RNA polymerase sigma factor, sigma-70 family. (377 aa)    
Predicted Functional Partners:
SDP76679.1
Uncharacterized conserved protein.
 
     0.945
SDP67687.1
Uncharacterized conserved protein.
 
     0.780
SDP66909.1
Uncharacterized conserved protein.
 
     0.775
SDO94854.1
Uncharacterized conserved protein.
 
     0.766
SDO28000.1
Uncharacterized conserved protein.
 
     0.763
SDP80980.1
Uncharacterized conserved protein.
 
     0.742
SDO39653.1
Uncharacterized conserved protein.
 
     0.741
SDP04111.1
Uncharacterized conserved protein.
 
     0.720
SDP34419.1
Uncharacterized conserved protein.
 
     0.707
SDN99273.1
Uncharacterized conserved protein.
 
     0.637
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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