STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP84224.1Uncharacterized membrane protein YgaE, UPF0421/DUF939 family. (394 aa)    
Predicted Functional Partners:
SDP84238.1
Protein of unknown function.
       0.563
SDP46538.1
Hypothetical protein.
  
     0.533
SDN84621.1
Protein of unknown function.
  
     0.520
SDN72301.1
Hypothetical protein.
  
     0.464
SDO10043.1
Glutamate synthase (NADPH/NADH) large chain.
       0.459
SDO06146.1
TIGR03085 family protein.
 
     0.443
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
    
  0.438
SDP50783.1
Hypothetical protein.
 
     0.434
SDO96637.1
Methyltransferase domain-containing protein.
  
     0.424
SDP59682.1
DNA-binding transcriptional regulator, MarR family.
      
 0.424
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.