STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP82596.1Helix-turn-helix domain-containing protein. (64 aa)    
Predicted Functional Partners:
SDP82587.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
     0.895
SDO10043.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.846
SDP82605.1
Hypothetical protein.
 
     0.819
SDP82615.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
     0.804
SDN75415.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.762
SDP32735.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
  
  0.761
SDP82626.1
Hypothetical protein.
       0.741
SDP60706.1
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.661
SDP82672.1
Hypothetical protein.
 
     0.593
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
 0.540
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.