STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP89768.1DNA-binding transcriptional regulator, PucR family. (479 aa)    
Predicted Functional Partners:
SDP89759.1
Hypothetical protein.
       0.776
SDP89782.1
CO or xanthine dehydrogenase, FAD-binding subunit.
 
     0.677
SDP89806.1
CO or xanthine dehydrogenase, Mo-binding subunit.
 
     0.670
SDP89410.1
Purine catabolism regulatory protein.
  
     0.669
SDP89797.1
Cytosine/adenosine deaminase.
 
     0.625
SDP89751.1
Hypothetical protein.
       0.581
SDP89788.1
Carbon-monoxide dehydrogenase small subunit.
       0.562
SDP89776.1
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
       0.555
SDP89812.1
tRNA(Arg) A34 adenosine deaminase TadA.
       0.495
SDP98333.1
Uncharacterized protein, contains SIS (Sugar ISomerase) phosphosugar binding domain.
  
     0.494
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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