STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP92728.1Cyclic nucleotide-binding domain-containing protein. (466 aa)    
Predicted Functional Partners:
SDP92718.1
Germacradienol/geosmin synthase.
 
  
  0.936
SDP92724.1
Germacradienol/geosmin synthase.
 
     0.931
SDP94610.1
Signal transduction histidine kinase.
 
 
 0.920
SDP92734.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
     0.909
SDO10043.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.904
SDP79634.1
Acyl transferase domain-containing protein.
   
 0.842
SDN88588.1
GAF domain-containing protein.
   
 0.823
SDP88629.1
Hypothetical protein.
  
  
  0.780
SDP88743.1
Hypothetical protein.
 
  
 0.776
dxs-3
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
    
  0.763
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.