STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP94754.1ABC-type nickel/cobalt efflux system, permease component RcnA. (459 aa)    
Predicted Functional Partners:
SDP94761.1
Tetratricopeptide repeat-containing protein.
 
     0.960
SDP94767.1
Protein of unknown function.
 
     0.959
SDP94773.1
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase.
 
     0.827
SDN89989.1
Intein C-terminal splicing region/intein N-terminal splicing region.
  
     0.504
SDO72270.1
Galactokinase.
  
     0.489
SDP94683.1
Protein of unknown function.
  
     0.474
SDP23084.1
TIGR04222 domain-containing protein.
  
     0.457
SDP68374.1
Regulatory protein, luxR family.
  
     0.442
SDP26237.1
Hypothetical protein.
  
     0.440
SDN73351.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.