STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP95972.1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (517 aa)    
Predicted Functional Partners:
SDO33027.1
Endo-1,4-beta-xylanase.
 
 
 0.873
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.872
SDP93580.1
Endo-1,4-beta-xylanase.
 
  
  0.854
SDO60221.1
Endo-1,4-beta-xylanase.
 
  
  0.789
SDO34731.1
Endo-1,4-beta-xylanase.
 
  
  0.785
SDP95967.1
Hypothetical protein.
       0.773
SDO60284.1
alpha-L-fucosidase 2.
 
  
  0.759
SDO39329.1
Endo-1,4-beta-xylanase.
 
  
  0.758
SDP95984.1
Cellobiose transport system substrate-binding protein.
 
     0.753
SDO35495.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
 
 
 0.751
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.