STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP96590.1Hypothetical protein. (157 aa)    
Predicted Functional Partners:
SDP96598.1
Hypothetical protein.
 
     0.956
SDP96602.1
Hypothetical protein.
 
     0.945
SDP96615.1
Hypothetical protein.
 
     0.943
SDP96610.1
Hypothetical protein.
 
     0.920
SDP96606.1
AAA-like domain-containing protein.
 
     0.918
SDP96594.1
NlpC/P60 family protein.
 
     0.845
SDP96586.1
Hypothetical protein.
       0.830
SDN78911.1
Type VII secretion-associated protein, Rv3446c family, C-terminal domain-containing protein; Belongs to the heat shock protein 70 family.
  
 
   0.778
SDP89257.1
Protein of unknown function.
  
    0.775
SDN78651.1
Type VII secretion protein EccE.
  
     0.774
Your Current Organism:
Lentzea jiangxiensis
NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034
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