SDP98321.1 protein (Lentzea jiangxiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDP98321.1

ATPase components of ABC transporters with duplicated ATPase domains. (558 aa)

Predicted Functional Partners:

rpsE

0.851

rplC

0.849

rplO

0.843

rpsP

0.838

rpsT

0.837

rplN

0.833

rpsI

0.833

rpmI

0.831

rplU

0.824

rpsO

0.822

Your Current Organism:

Lentzea jiangxiensis

NCBI taxonomy Id: 641025
Other names: CGMCC 4.6609, L. jiangxiensis, Lentzea jiangxiensis Li et al. 2012, Lentzea sp. FXJ1.034, NBRC 106680, strain FXJ1.034

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDP98321.1	rplC	SAMN05421507_13814	SAMN05421507_101243	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.849
SDP98321.1	rplN	SAMN05421507_13814	SAMN05421507_101253	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.833
SDP98321.1	rplO	SAMN05421507_13814	SAMN05421507_101262	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.843
SDP98321.1	rplU	SAMN05421507_13814	SAMN05421507_11035	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.824
SDP98321.1	rpmI	SAMN05421507_13814	SAMN05421507_1011553	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.831
SDP98321.1	rpsE	SAMN05421507_13814	SAMN05421507_101260	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.851
SDP98321.1	rpsI	SAMN05421507_13814	SAMN05421507_101290	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.833
SDP98321.1	rpsO	SAMN05421507_13814	SAMN05421507_1011184	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.822
SDP98321.1	rpsP	SAMN05421507_13814	SAMN05421507_1011057	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.838
SDP98321.1	rpsT	SAMN05421507_13814	SAMN05421507_1108	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.837
rplC	SDP98321.1	SAMN05421507_101243	SAMN05421507_13814	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATPase components of ABC transporters with duplicated ATPase domains.	0.849
rplC	rplN	SAMN05421507_101243	SAMN05421507_101253	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplC	rplO	SAMN05421507_101243	SAMN05421507_101262	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplU	SAMN05421507_101243	SAMN05421507_11035	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rpmI	SAMN05421507_101243	SAMN05421507_1011553	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.999
rplC	rpsE	SAMN05421507_101243	SAMN05421507_101260	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplC	rpsI	SAMN05421507_101243	SAMN05421507_101290	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplC	rpsO	SAMN05421507_101243	SAMN05421507_1011184	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rplC	rpsP	SAMN05421507_101243	SAMN05421507_1011057	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplC	rpsT	SAMN05421507_101243	SAMN05421507_1108	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.997