STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI97299.1PFAM: Cupin 2, conserved barrel; KEGG: cbe:Cbei_3368 cupin 2 domain-containing protein. (109 aa)    
Predicted Functional Partners:
EHI97300.1
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
    0.548
EHI97690.1
Cupin 2 conserved barrel domain protein; KEGG: mta:Moth_2004 MerR family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
 0.514
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.496
EHI96826.1
KEGG: clj:CLJU_c35020 putative AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain.
  
 0.461
EHI98331.1
KEGG: bcq:BCQ_1986 transcriptional regulator, AraC/XylS family; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain.
  
 0.461
EHI99414.1
KEGG: csh:Closa_2193 transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain.
  
 0.461
EHI97301.1
Hypothetical protein.
       0.457
EHJ01744.1
Polygalacturonase; KEGG: ttm:Tthe_2398 glycoside hydrolase family 28; PFAM: Glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.448
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.442
EHI98548.1
KEGG: cbe:Cbei_2322 metal dependent phosphohydrolase.
   
    0.440
Your Current Organism:
Clostridium sp. DLVIII
NCBI taxonomy Id: 641107
Other names: C. sp. DL-VIII, Clostridium sp. DL-VIII
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