STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI97407.1KEGG: cbe:Cbei_0385 spore coat protein CotS; TIGRFAM: Spore coat protein CotS; PFAM: Choline/ethanolamine kinase. (345 aa)    
Predicted Functional Partners:
EHI97405.1
KEGG: cbe:Cbei_0383 spore coat protein CotS; TIGRFAM: Spore coat protein CotS; PFAM: Aminoglycoside phosphotransferase.
 
   
0.938
EHI97404.1
PFAM: Glycosyl transferase, group 1; KEGG: cbe:Cbei_0382 glycosyl transferase, group 1.
 
  
 0.892
EHI97406.1
KEGG: cbe:Cbei_0384 hypothetical protein.
  
    0.853
EHI99738.1
KEGG: cbe:Cbei_1697 sporulation stage III, protein AF; TIGRFAM: Sporulation stage III, protein AF; PFAM: Sporulation stage III, protein AF.
  
     0.748
EHJ01851.1
KEGG: cbe:Cbei_0601 hypothetical protein.
  
     0.739
EHI97422.1
KEGG: cbe:Cbei_0391 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
 
   
 0.735
EHI98073.1
Sporulation protein YqfD; KEGG: cbe:Cbei_0841 putative stage IV sporulation YqfD; TIGRFAM: Putative stage IV sporulation YqfD; PFAM: Putative stage IV sporulation YqfD.
  
   
 0.704
EHI97036.1
KEGG: cbe:Cbei_0060 hypothetical protein.
  
  
 0.693
EHI97011.1
KEGG: cbe:Cbei_0035 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
     0.668
EHI99564.1
KEGG: cbe:Cbei_1568 sporulation protein YtxC; TIGRFAM: Sporulation protein YtxC; PFAM: Sporulation protein YtxC.
  
     0.664
Your Current Organism:
Clostridium sp. DLVIII
NCBI taxonomy Id: 641107
Other names: C. sp. DL-VIII, Clostridium sp. DL-VIII
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