STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI97506.1PFAM: Glycosyl hydrolase, family 88; KEGG: cbe:Cbei_0449 glycosy hydrolase family protein. (376 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.748
EHJ01744.1
Polygalacturonase; KEGG: ttm:Tthe_2398 glycoside hydrolase family 28; PFAM: Glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.725
EHI97507.1
PFAM: Xylose isomerase, TIM barrel domain; KEGG: cbe:Cbei_0450 xylose isomerase domain-containing protein.
 
    0.697
EHJ00985.1
PFAM: Glycoside hydrolase, family 28; KEGG: cpy:Cphy_3217 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
 
     0.650
EHJ00051.1
PFAM: Pectinesterase, catalytic; KEGG: ccb:Clocel_1424 pectinesterase.
 
   
 0.603
EHI99233.1
PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: dze:Dd1591_1049 alpha-L-rhamnosidase.
 
  
  0.589
EHJ01754.1
Beta-galactosidase; KEGG: pjd:Pjdr2_4080 beta-galactosidase; PFAM: Glycoside hydrolase family 2, carbohydrate-binding; Glycoside hydrolase family 2, TIM barrel; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.586
EHI99213.1
PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: dze:Dd1591_1049 alpha-L-rhamnosidase.
 
  
  0.585
EHI97509.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
     0.555
EHI96751.1
Xylan 1,4-beta-xylosidase; KEGG: cbe:Cbei_4973 alpha-N-arabinofuranosidase; PFAM: Glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.545
Your Current Organism:
Clostridium sp. DLVIII
NCBI taxonomy Id: 641107
Other names: C. sp. DL-VIII, Clostridium sp. DL-VIII
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