STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHJ00169.1KEGG: cbe:Cbei_4707 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat. (595 aa)    
Predicted Functional Partners:
EHJ00675.1
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; KEGG: clj:CLJU_c30050 putative sensor histidine kinase/response regulator hybrid; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region.
   
 0.912
EHJ00812.1
KEGG: cbe:Cbei_2160 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain.
    
 0.890
EHJ00171.1
PFAM: Glycosyl transferase, family 2; Glycosyl transferase, group 1; KEGG: bld:BLi00806 hypothetical protein.
 0.888
EHI98324.1
PFAM: Glycosyl transferase, group 1; KEGG: eel:EUBELI_00251 hypothetical protein.
  
 0.882
EHI99837.1
Ankyrin; KEGG: cbe:Cbei_2132 ankyrin; PFAM: Ankyrin repeat; SMART: Ankyrin repeat.
  
 0.864
EHI99698.1
Diguanylate cyclase with PAS/PAC and GAF sensors; TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold; GAF; KEGG: cbe:Cbei_0744 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; PAS.
    
 0.859
EHJ02216.1
Histidine kinase; KEGG: cbe:Cbei_4814 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region.
  
 0.836
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.820
EHI99072.1
PFAM: Metallophosphoesterase; KEGG: vsa:VSAL_p840_64 calcineurin-like phosphoesterase.
  
 0.814
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.807
Your Current Organism:
Clostridium sp. DLVIII
NCBI taxonomy Id: 641107
Other names: C. sp. DL-VIII, Clostridium sp. DL-VIII
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