STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHJ01215.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cbe:Cbei_3177 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
EHI99050.1
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: cbe:Cbei_3865 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.743
EHI97636.1
PFAM: HTH transcriptional regulator, LysR; KEGG: cbe:Cbei_3181 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.685
EHJ01216.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cbe:Cbei_3178 lysine exporter protein LysE/YggA.
       0.533
EHJ01217.1
Putative transcriptional regulator, GntR family; KEGG: clj:CLJU_c19590 putative transcriptional regulator; PFAM: Aminotransferase, class I/II.
       0.442
EHJ01412.1
KEGG: cbe:Cbei_4204 glutamate synthase (ferredoxin); PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
  
  
 0.411
Your Current Organism:
Clostridium sp. DLVIII
NCBI taxonomy Id: 641107
Other names: C. sp. DL-VIII, Clostridium sp. DL-VIII
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