Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFG30108.2 | EFG30280.1 | HMPREF9021_02013 | HMPREF9021_01908 | Hypothetical protein. | MATE efflux family protein. | 0.542 |
EFG30108.2 | EFG30561.2 | HMPREF9021_02013 | HMPREF9021_01530 | Hypothetical protein. | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.527 |
EFG30108.2 | EFG31121.1 | HMPREF9021_02013 | HMPREF9021_00950 | Hypothetical protein. | Hypothetical protein. | 0.431 |
EFG30108.2 | EJZ50282.1 | HMPREF9021_02013 | HMPREF9021_02488 | Hypothetical protein. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.483 |
EFG30108.2 | nuoB | HMPREF9021_02013 | HMPREF9021_00464 | Hypothetical protein. | NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.433 |
EFG30108.2 | nuoC | HMPREF9021_02013 | HMPREF9021_00462 | Hypothetical protein. | NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.490 |
EFG30108.2 | nuoD | HMPREF9021_02013 | HMPREF9021_00461 | Hypothetical protein. | NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.433 |
EFG30108.2 | nuoH | HMPREF9021_02013 | HMPREF9021_00452 | Hypothetical protein. | NADH-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. | 0.446 |
EFG30280.1 | EFG30108.2 | HMPREF9021_01908 | HMPREF9021_02013 | MATE efflux family protein. | Hypothetical protein. | 0.542 |
EFG30280.1 | EFG30561.2 | HMPREF9021_01908 | HMPREF9021_01530 | MATE efflux family protein. | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.672 |
EFG30280.1 | EJZ50282.1 | HMPREF9021_01908 | HMPREF9021_02488 | MATE efflux family protein. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.649 |
EFG30561.2 | EFG30108.2 | HMPREF9021_01530 | HMPREF9021_02013 | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Hypothetical protein. | 0.527 |
EFG30561.2 | EFG30280.1 | HMPREF9021_01530 | HMPREF9021_01908 | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | MATE efflux family protein. | 0.672 |
EFG30561.2 | EJZ50282.1 | HMPREF9021_01530 | HMPREF9021_02488 | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.548 |
EFG31121.1 | EFG30108.2 | HMPREF9021_00950 | HMPREF9021_02013 | Hypothetical protein. | Hypothetical protein. | 0.431 |
EFG31121.1 | nuoB | HMPREF9021_00950 | HMPREF9021_00464 | Hypothetical protein. | NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.917 |
EFG31121.1 | nuoC | HMPREF9021_00950 | HMPREF9021_00462 | Hypothetical protein. | NADH-quinone oxidoreductase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.948 |
EFG31121.1 | nuoD | HMPREF9021_00950 | HMPREF9021_00461 | Hypothetical protein. | NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.946 |
EJZ50282.1 | EFG30108.2 | HMPREF9021_02488 | HMPREF9021_02013 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Hypothetical protein. | 0.483 |
EJZ50282.1 | EFG30280.1 | HMPREF9021_02488 | HMPREF9021_01908 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | MATE efflux family protein. | 0.649 |
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