STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccsBCytochrome c-type biogenesis protein CcsB. (396 aa)    
Predicted Functional Partners:
EFI22869.1
ResB-like protein.
 
  
 0.992
EFI23310.1
Hypothetical protein.
  
     0.771
msrB
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.691
EFI24038.1
ABC transporter, ATP-binding protein.
    
  0.622
EFI23063.1
Hypothetical protein.
  
     0.610
cobA
uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
    0.590
EFI22870.1
Putative cytochrome c4.
     
 0.559
EFI24732.1
RDD family protein.
  
     0.557
EFI24738.1
FAD binding domain protein.
 
     0.557
lptB
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
    
  0.520
Your Current Organism:
Neisseria sp. F0314
NCBI taxonomy Id: 641149
Other names: N. sp. oral taxon 014 str. F0314, Neisseria sp. oral taxon 014 str. F0314, Neisseria sp. oral taxon 014 strain F0314
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.