T1F393_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1F393_HELRO

Uncharacterized protein. (548 aa)

Predicted Functional Partners:

T1EGP8_HELRO

0.971

T1FM46_HELRO

0.962

T1EE25_HELRO

0.938

T1G671_HELRO

0.938

T1G9M3_HELRO

0.931

T1FQ96_HELRO

0.912

T1ELG6_HELRO

0.909

T1G2S8_HELRO

0.908

T1EVK6_HELRO

0.893

T1F4I8_HELRO

0.878

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EE25_HELRO	T1EGP8_HELRO	T1EE25	T1EGP8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.885
T1EE25_HELRO	T1ELG6_HELRO	T1EE25	T1ELG6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
T1EE25_HELRO	T1EVK6_HELRO	T1EE25	T1EVK6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
T1EE25_HELRO	T1F393_HELRO	T1EE25	T1F393	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.938
T1EE25_HELRO	T1F4I8_HELRO	T1EE25	T1F4I8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
T1EE25_HELRO	T1FM46_HELRO	T1EE25	T1FM46	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
T1EE25_HELRO	T1FQ96_HELRO	T1EE25	T1FQ96	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.863
T1EE25_HELRO	T1G2S8_HELRO	T1EE25	T1G2S8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.999
T1EE25_HELRO	T1G671_HELRO	T1EE25	T1G671	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.926
T1EE25_HELRO	T1G9M3_HELRO	T1EE25	T1G9M3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
T1EGP8_HELRO	T1EE25_HELRO	T1EGP8	T1EE25	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.885
T1EGP8_HELRO	T1ELG6_HELRO	T1EGP8	T1ELG6	Uncharacterized protein.	Uncharacterized protein.	0.771
T1EGP8_HELRO	T1EVK6_HELRO	T1EGP8	T1EVK6	Uncharacterized protein.	Uncharacterized protein.	0.987
T1EGP8_HELRO	T1F393_HELRO	T1EGP8	T1F393	Uncharacterized protein.	Uncharacterized protein.	0.971
T1EGP8_HELRO	T1F4I8_HELRO	T1EGP8	T1F4I8	Uncharacterized protein.	Uncharacterized protein.	0.789
T1EGP8_HELRO	T1FM46_HELRO	T1EGP8	T1FM46	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.763
T1EGP8_HELRO	T1FQ96_HELRO	T1EGP8	T1FQ96	Uncharacterized protein.	Uncharacterized protein.	0.796
T1EGP8_HELRO	T1G2S8_HELRO	T1EGP8	T1G2S8	Uncharacterized protein.	RPOLD domain-containing protein.	0.718
T1EGP8_HELRO	T1G671_HELRO	T1EGP8	T1G671	Uncharacterized protein.	Uncharacterized protein.	0.872
T1EGP8_HELRO	T1G9M3_HELRO	T1EGP8	T1G9M3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.821