T1FM87_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FM87_HELRO

Uncharacterized protein. (322 aa)

Predicted Functional Partners:

T1EDC6_HELRO

0.620

T1ELT9_HELRO

0.620

T1EMC5_HELRO

0.620

T1EMF0_HELRO

0.620

T1FN27_HELRO

0.620

T1FP62_HELRO

0.620

T1FQH3_HELRO

0.620

T1G8P1_HELRO

0.620

T1G8P2_HELRO

0.620

T1G939_HELRO

0.620

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDC6_HELRO	T1FM87_HELRO	T1EDC6	T1FM87	Sodium/potassium-transporting ATPase subunit alpha.	Uncharacterized protein.	0.620
T1ELT9_HELRO	T1FM87_HELRO	T1ELT9	T1FM87	Sodium/potassium-transporting ATPase subunit alpha.	Uncharacterized protein.	0.620
T1EMC5_HELRO	T1FM87_HELRO	T1EMC5	T1FM87	Sodium/potassium-transporting ATPase subunit alpha.	Uncharacterized protein.	0.620
T1EMC5_HELRO	T1G8P1_HELRO	T1EMC5	T1G8P1	Sodium/potassium-transporting ATPase subunit alpha.	Cation_ATPase_N domain-containing protein.	0.897
T1EMF0_HELRO	T1FM87_HELRO	T1EMF0	T1FM87	Cation_ATPase_N domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	Uncharacterized protein.	0.620
T1FM87_HELRO	T1EDC6_HELRO	T1FM87	T1EDC6	Uncharacterized protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.620
T1FM87_HELRO	T1ELT9_HELRO	T1FM87	T1ELT9	Uncharacterized protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.620
T1FM87_HELRO	T1EMC5_HELRO	T1FM87	T1EMC5	Uncharacterized protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.620
T1FM87_HELRO	T1EMF0_HELRO	T1FM87	T1EMF0	Uncharacterized protein.	Cation_ATPase_N domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.	0.620
T1FM87_HELRO	T1FN27_HELRO	T1FM87	T1FN27	Uncharacterized protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.620
T1FM87_HELRO	T1FP62_HELRO	T1FM87	T1FP62	Uncharacterized protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.620
T1FM87_HELRO	T1FQH3_HELRO	T1FM87	T1FQH3	Uncharacterized protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.620
T1FM87_HELRO	T1G8P1_HELRO	T1FM87	T1G8P1	Uncharacterized protein.	Cation_ATPase_N domain-containing protein.	0.620
T1FM87_HELRO	T1G8P2_HELRO	T1FM87	T1G8P2	Uncharacterized protein.	Uncharacterized protein.	0.620
T1FM87_HELRO	T1G939_HELRO	T1FM87	T1G939	Uncharacterized protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.620
T1FN27_HELRO	T1FM87_HELRO	T1FN27	T1FM87	Sodium/potassium-transporting ATPase subunit alpha.	Uncharacterized protein.	0.620
T1FP62_HELRO	T1FM87_HELRO	T1FP62	T1FM87	Sodium/potassium-transporting ATPase subunit alpha.	Uncharacterized protein.	0.620
T1FQH3_HELRO	T1FM87_HELRO	T1FQH3	T1FM87	Sodium/potassium-transporting ATPase subunit alpha.	Uncharacterized protein.	0.620
T1G8P1_HELRO	T1EMC5_HELRO	T1G8P1	T1EMC5	Cation_ATPase_N domain-containing protein.	Sodium/potassium-transporting ATPase subunit alpha.	0.897
T1G8P1_HELRO	T1FM87_HELRO	T1G8P1	T1FM87	Cation_ATPase_N domain-containing protein.	Uncharacterized protein.	0.620