T1FTF2_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FTF2_HELRO

Uncharacterized protein. (500 aa)

Predicted Functional Partners:

T1F683_HELRO

0.960

T1G1V0_HELRO

0.741

T1ELF6_HELRO

0.628

T1FXA5_HELRO

0.623

T1EDX7_HELRO

0.620

T1G2N3_HELRO

0.567

T1EE59_HELRO

0.565

T1G7C8_HELRO

0.563

T1G0T5_HELRO

0.548

T1EF61_HELRO

0.451

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EDX7_HELRO	T1EE59_HELRO	T1EDX7	T1EE59	Uncharacterized protein.	NTP_transferase domain-containing protein.	0.565
T1EDX7_HELRO	T1ELF6_HELRO	T1EDX7	T1ELF6	Uncharacterized protein.	Uncharacterized protein.	0.966
T1EDX7_HELRO	T1F683_HELRO	T1EDX7	T1F683	Uncharacterized protein.	Uncharacterized protein.	0.618
T1EDX7_HELRO	T1FTF2_HELRO	T1EDX7	T1FTF2	Uncharacterized protein.	Uncharacterized protein.	0.620
T1EDX7_HELRO	T1FXA5_HELRO	T1EDX7	T1FXA5	Uncharacterized protein.	Uncharacterized protein.	0.547
T1EDX7_HELRO	T1G0T5_HELRO	T1EDX7	T1G0T5	Uncharacterized protein.	Uncharacterized protein.	0.446
T1EDX7_HELRO	T1G1V0_HELRO	T1EDX7	T1G1V0	Uncharacterized protein.	Uncharacterized protein.	0.621
T1EDX7_HELRO	T1G2N3_HELRO	T1EDX7	T1G2N3	Uncharacterized protein.	Uncharacterized protein.	0.570
T1EDX7_HELRO	T1G7C8_HELRO	T1EDX7	T1G7C8	Uncharacterized protein.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.571
T1EE59_HELRO	T1EDX7_HELRO	T1EE59	T1EDX7	NTP_transferase domain-containing protein.	Uncharacterized protein.	0.565
T1EE59_HELRO	T1ELF6_HELRO	T1EE59	T1ELF6	NTP_transferase domain-containing protein.	Uncharacterized protein.	0.576
T1EE59_HELRO	T1FTF2_HELRO	T1EE59	T1FTF2	NTP_transferase domain-containing protein.	Uncharacterized protein.	0.565
T1EE59_HELRO	T1G1V0_HELRO	T1EE59	T1G1V0	NTP_transferase domain-containing protein.	Uncharacterized protein.	0.567
T1EE59_HELRO	T1G2N3_HELRO	T1EE59	T1G2N3	NTP_transferase domain-containing protein.	Uncharacterized protein.	0.586
T1EE59_HELRO	T1G7C8_HELRO	T1EE59	T1G7C8	NTP_transferase domain-containing protein.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.950
T1EF61_HELRO	T1FTF2_HELRO	T1EF61	T1FTF2	Bromo domain-containing protein.	Uncharacterized protein.	0.451
T1ELF6_HELRO	T1EDX7_HELRO	T1ELF6	T1EDX7	Uncharacterized protein.	Uncharacterized protein.	0.966
T1ELF6_HELRO	T1EE59_HELRO	T1ELF6	T1EE59	Uncharacterized protein.	NTP_transferase domain-containing protein.	0.576
T1ELF6_HELRO	T1F683_HELRO	T1ELF6	T1F683	Uncharacterized protein.	Uncharacterized protein.	0.623
T1ELF6_HELRO	T1FTF2_HELRO	T1ELF6	T1FTF2	Uncharacterized protein.	Uncharacterized protein.	0.628