T1FVZ0_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FVZ0_HELRO

Uncharacterized protein. (647 aa)

Predicted Functional Partners:

T1FZ49_HELRO

0.919

T1FXD4_HELRO

0.590

T1G8C5_HELRO

0.463

T1FHE0_HELRO

0.453

T1EH62_HELRO

0.446

T1FPZ7_HELRO

0.435

T1FTW6_HELRO

0.434

T1EE70_HELRO

0.431

T1EFY5_HELRO

0.431

T1FY33_HELRO

0.431

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EE70_HELRO	T1FPZ7_HELRO	T1EE70	T1FPZ7	Uncharacterized protein.	RING-type domain-containing protein.	0.562
T1EE70_HELRO	T1FVZ0_HELRO	T1EE70	T1FVZ0	Uncharacterized protein.	Uncharacterized protein.	0.431
T1EE70_HELRO	T1FXD4_HELRO	T1EE70	T1FXD4	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.449
T1EE70_HELRO	T1FZ49_HELRO	T1EE70	T1FZ49	Uncharacterized protein.	ABC transporter domain-containing protein.	0.435
T1EFY5_HELRO	T1FPZ7_HELRO	T1EFY5	T1FPZ7	Uncharacterized protein; Belongs to the AAA ATPase family.	RING-type domain-containing protein.	0.562
T1EFY5_HELRO	T1FVZ0_HELRO	T1EFY5	T1FVZ0	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.431
T1EFY5_HELRO	T1FXD4_HELRO	T1EFY5	T1FXD4	Uncharacterized protein; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.450
T1EFY5_HELRO	T1FZ49_HELRO	T1EFY5	T1FZ49	Uncharacterized protein; Belongs to the AAA ATPase family.	ABC transporter domain-containing protein.	0.435
T1EH62_HELRO	T1FVZ0_HELRO	T1EH62	T1FVZ0	Uncharacterized protein.	Uncharacterized protein.	0.446
T1EH62_HELRO	T1FZ49_HELRO	T1EH62	T1FZ49	Uncharacterized protein.	ABC transporter domain-containing protein.	0.450
T1FHE0_HELRO	T1FVZ0_HELRO	T1FHE0	T1FVZ0	PDZ domain-containing protein.	Uncharacterized protein.	0.453
T1FHE0_HELRO	T1FZ49_HELRO	T1FHE0	T1FZ49	PDZ domain-containing protein.	ABC transporter domain-containing protein.	0.456
T1FPZ7_HELRO	T1EE70_HELRO	T1FPZ7	T1EE70	RING-type domain-containing protein.	Uncharacterized protein.	0.562
T1FPZ7_HELRO	T1EFY5_HELRO	T1FPZ7	T1EFY5	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.562
T1FPZ7_HELRO	T1FVZ0_HELRO	T1FPZ7	T1FVZ0	RING-type domain-containing protein.	Uncharacterized protein.	0.435
T1FPZ7_HELRO	T1FXD4_HELRO	T1FPZ7	T1FXD4	RING-type domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.402
T1FPZ7_HELRO	T1FY33_HELRO	T1FPZ7	T1FY33	RING-type domain-containing protein.	Uncharacterized protein.	0.562
T1FPZ7_HELRO	T1FZ49_HELRO	T1FPZ7	T1FZ49	RING-type domain-containing protein.	ABC transporter domain-containing protein.	0.440
T1FTW6_HELRO	T1FVZ0_HELRO	T1FTW6	T1FVZ0	Uncharacterized protein.	Uncharacterized protein.	0.434
T1FTW6_HELRO	T1FZ49_HELRO	T1FTW6	T1FZ49	Uncharacterized protein.	ABC transporter domain-containing protein.	0.434