T1FXD8_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FXD8_HELRO

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (305 aa)

Predicted Functional Partners:

T1EGN6_HELRO

0.992

T1FT32_HELRO

0.958

T1FQL0_HELRO

0.901

T1FV39_HELRO

0.765

T1FPX0_HELRO

0.754

T1G8K3_HELRO

0.754

T1G055_HELRO

0.677

T1FVS4_HELRO

0.676

T1G250_HELRO

0.676

T1FP39_HELRO

0.665

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EGN6_HELRO	T1FPX0_HELRO	T1EGN6	T1FPX0	Uncharacterized protein; Belongs to the protein kinase superfamily.	AGC-kinase C-terminal domain-containing protein.	0.774
T1EGN6_HELRO	T1FQL0_HELRO	T1EGN6	T1FQL0	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.992
T1EGN6_HELRO	T1FT32_HELRO	T1EGN6	T1FT32	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.985
T1EGN6_HELRO	T1FV39_HELRO	T1EGN6	T1FV39	Uncharacterized protein; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase.	0.782
T1EGN6_HELRO	T1FVS4_HELRO	T1EGN6	T1FVS4	Uncharacterized protein; Belongs to the protein kinase superfamily.	Reelin domain-containing protein.	0.676
T1EGN6_HELRO	T1FXD8_HELRO	T1EGN6	T1FXD8	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.992
T1EGN6_HELRO	T1G250_HELRO	T1EGN6	T1G250	Uncharacterized protein; Belongs to the protein kinase superfamily.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.676
T1EGN6_HELRO	T1G8K3_HELRO	T1EGN6	T1G8K3	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.744
T1FP39_HELRO	T1FQL0_HELRO	T1FP39	T1FQL0	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.665
T1FP39_HELRO	T1FXD8_HELRO	T1FP39	T1FXD8	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.665
T1FP39_HELRO	T1G055_HELRO	T1FP39	T1G055	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.901
T1FPX0_HELRO	T1EGN6_HELRO	T1FPX0	T1EGN6	AGC-kinase C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.774
T1FPX0_HELRO	T1FQL0_HELRO	T1FPX0	T1FQL0	AGC-kinase C-terminal domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.754
T1FPX0_HELRO	T1FXD8_HELRO	T1FPX0	T1FXD8	AGC-kinase C-terminal domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.754
T1FQL0_HELRO	T1EGN6_HELRO	T1FQL0	T1EGN6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.992
T1FQL0_HELRO	T1FP39_HELRO	T1FQL0	T1FP39	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.665
T1FQL0_HELRO	T1FPX0_HELRO	T1FQL0	T1FPX0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	AGC-kinase C-terminal domain-containing protein.	0.754
T1FQL0_HELRO	T1FT32_HELRO	T1FQL0	T1FT32	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.958
T1FQL0_HELRO	T1FV39_HELRO	T1FQL0	T1FV39	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase.	0.770
T1FQL0_HELRO	T1FVS4_HELRO	T1FQL0	T1FVS4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Reelin domain-containing protein.	0.676