T1FXL1_HELRO protein (Helobdella robusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1FXL1_HELRO

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (282 aa)

Predicted Functional Partners:

T1EE51_HELRO

0.641

T1FXH3_HELRO

0.641

T1G6I0_HELRO

0.641

T1EIJ5_HELRO

0.608

T1EGN6_HELRO

0.559

T1EFL3_HELRO

0.555

T1EKF3_HELRO

0.555

T1F6W9_HELRO

0.555

T1FAL1_HELRO

0.555

T1FKI5_HELRO

0.555

Your Current Organism:

Helobdella robusta

NCBI taxonomy Id: 6412
Other names: H. robusta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1EE51_HELRO	T1EFL3_HELRO	T1EE51	T1EFL3	AMPKBI domain-containing protein.	Uncharacterized protein.	0.846
T1EE51_HELRO	T1EKF3_HELRO	T1EE51	T1EKF3	AMPKBI domain-containing protein.	Uncharacterized protein.	0.846
T1EE51_HELRO	T1F6W9_HELRO	T1EE51	T1F6W9	AMPKBI domain-containing protein.	C2H2-type domain-containing protein.	0.673
T1EE51_HELRO	T1FAL1_HELRO	T1EE51	T1FAL1	AMPKBI domain-containing protein.	Uncharacterized protein.	0.679
T1EE51_HELRO	T1FKI5_HELRO	T1EE51	T1FKI5	AMPKBI domain-containing protein.	Uncharacterized protein.	0.673
T1EE51_HELRO	T1FXH3_HELRO	T1EE51	T1FXH3	AMPKBI domain-containing protein.	AMPKBI domain-containing protein.	0.565
T1EE51_HELRO	T1FXL1_HELRO	T1EE51	T1FXL1	AMPKBI domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.641
T1EE51_HELRO	T1G6I0_HELRO	T1EE51	T1G6I0	AMPKBI domain-containing protein.	AMPKBI domain-containing protein.	0.561
T1EFL3_HELRO	T1EE51_HELRO	T1EFL3	T1EE51	Uncharacterized protein.	AMPKBI domain-containing protein.	0.846
T1EFL3_HELRO	T1EKF3_HELRO	T1EFL3	T1EKF3	Uncharacterized protein.	Uncharacterized protein.	0.566
T1EFL3_HELRO	T1FXH3_HELRO	T1EFL3	T1FXH3	Uncharacterized protein.	AMPKBI domain-containing protein.	0.846
T1EFL3_HELRO	T1FXL1_HELRO	T1EFL3	T1FXL1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.555
T1EFL3_HELRO	T1G6I0_HELRO	T1EFL3	T1G6I0	Uncharacterized protein.	AMPKBI domain-containing protein.	0.846
T1EGN6_HELRO	T1FXL1_HELRO	T1EGN6	T1FXL1	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.559
T1EIJ5_HELRO	T1FXL1_HELRO	T1EIJ5	T1FXL1	KA1 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.608
T1EKF3_HELRO	T1EE51_HELRO	T1EKF3	T1EE51	Uncharacterized protein.	AMPKBI domain-containing protein.	0.846
T1EKF3_HELRO	T1EFL3_HELRO	T1EKF3	T1EFL3	Uncharacterized protein.	Uncharacterized protein.	0.566
T1EKF3_HELRO	T1FXH3_HELRO	T1EKF3	T1FXH3	Uncharacterized protein.	AMPKBI domain-containing protein.	0.846
T1EKF3_HELRO	T1FXL1_HELRO	T1EKF3	T1FXL1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.555
T1EKF3_HELRO	T1G6I0_HELRO	T1EKF3	T1G6I0	Uncharacterized protein.	AMPKBI domain-containing protein.	0.846